Senior Data Scientist For The Single-Cell Omics Platform

Copenhagen University

Description

Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen

We are seeking a Senior Data Scientist to strengthen our abilities to draw robust biological inferences from large-scale data generated in the Single- Cell Omics Platform. The role is an exciting opportunity for ambitious candidates with a computational background to establish themselves in the field of genomics services.

The successful candidate will work in the Single-Cell Omics Platform that provides the Center's researchers with cutting-edge bulk and single-cell transcriptomics and epigenetics techniques, using the state-of-the-art equipment, data science and machine learning approaches.

The role As a senior data scientist in the Single-Cell Omics Platform, you will be responsible for processing, analyzing and interpreting single-cell transcriptomics and single-cell epigenetics data as well as overseeing the development of our data workflows and the implementation of new analysis techniques. Furthermore, you will be supervising the Platform's computational biology team.

Primary tasks:

  To develop and maintain computational workflows to process and analyze single-cell sequencing data.

  To apply the computational single-cell tools on primary data from research groups across the Center.

  To supervise and support the Platform's computational biology team.

About CBMR

Our researchers share a common purpose as they seek to transform the basic understanding of the mechanisms involved in metabolic health and disease, and to accelerate this knowledge towards new prevention and treatment strategies.

The Center has around 260 employees, consisting of 21 research groups and 5 technology platforms, who work in a vibrant international research environment with a focus on interdisciplinary collaboration.

The Center's research has resulted in seminal discoveries as to how genes, hormones, and environmental factors influence metabolic health and disease throughout life. You may read more about us at www. cbmr.ku.dk.

About the Platform

The Single-Cell Omics Platform is an integral part of the Center and is embedded tightly into the Danish single-cell community. The team has a solid expertise in working with single-cell data, and currently comprises laboratory technicians, bioinformaticians, mathematicians and a platform manager.

You will work directly with many research Groups on a daily basis and contribute to their research, which is often published in high impact scientific journals. See the latest publications, and learn more about the platform, here: https: // cbmr.ku.dk/researchfacilities/single-cell-omics/.

Your profileRequired education/skills :

  A science degree in data science, applied math, applied statistics, bioinformatics, computer science, systems biology, biotechnology or the like.

  Solid programming skills in the scripting languages Python or R.

  Experience with workflow management using environments such as Targets or Snakemake.

  Solid experience working with single-cell transcriptomics software such as Seurat or Scanpy.

  Experience with computational tools for preprocessing of single-cell sequencing data.

  Experience in using the Unix/Linux operating system.

Disirable criteria:

  Experience in analyzing single-cell epigenetics data.

  Experience working with data visualization.

  Experience in working with machine learning techniques.

Personal skills :

  Motivated and hardworking personality with good social skills

  Motivated to instruct researchers with less advanced programming skills in using the Platform's computational workflows

  Fluent in written and spoken English is an absolute requirement.

We offer Creative and stimulating working conditions in dynamic and international research environment.

  Highly motivated colleagues and the possibility to contribute to and co- author cutting-edge scientific publications.

  Attractive employment conditions.

  A centrally located workplace.

Place of employment The place of employment is the Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen.

Terms of salary and employment The employment as senior data scientist is a 3-year position starting as soon as possible.

Employment will be as Academic Research Officer or Research Consultant in accordance with the provisions of the collective agreement between the Danish Ministry of Finance and the AC (the Danish Confederation of Professional Associations), with the possibility to negotiate a salary supplement based on prior experiences and qualifications.

Questions For further questions about the job description and qualifications, please contact Associate Professor Tune H. Pers at tune.pers@sund.ku.dk or platform manager Mie Mechta at mie.mechta@sund.ku.dk. For questions regarding the recruitment procedure, please contact SUND HR CBMR at SUND-HR-CBMR@sund.ku.dk

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